Beyond the monastery gates lies a quiet, well-tended courtyard – a stark contrast to the tourist bustle around Svetitskhoveli. The nuns maintain the garden year-round: cypresses, firs, maples, rose bushes, and photinia shrubs (especially fragrant in May). Pathways are lined with roses and ornamental shrubs – the grounds feel more like a botanical garden than a monastic yard.
The main church is the 11th-century Transfiguration Church, a cross-dome structure with decorative stonework typical of Georgian architecture. The dome was destroyed by an earthquake in 1283 and rebuilt at the turn of the 13th–14th centuries. Inside are 16th–17th century frescoes (the originals did not survive), an 18th-century stone iconostasis, and numerous icons and relics. Sacred objects include Saint Nino's blackberry bush, a piece of the Life-Giving Pillar, and the miraculous Iverian Icon of the Mother of God. Set into the church floor are the tombs of King Mirian III and Queen Nana – Georgia's first Christian monarchs.
To the right of the entrance is the small Church of Saint Nino, presumably from the early medieval period, rebuilt multiple times. In the northwest corner of the wall stands a three-storey 15th–16th century bell tower: the ground floor serves as the entrance, the second was used for living and observation, and the third is an open belfry. In the courtyard is the grave of Saint Gabriel (canonised in 2012), now a pilgrimage site.